On some of the Monquista epic battles (for the story) I ran into a bug where after I defeated the target enemy, the goal switched to "Defeat all enemies." This only happened with Monquistans (not the spiders in that one dungeon). Please fix.
I think this is intentional. After you defeat the captain, the crossbowmen hiding behind the sandbags will salute the PC before escaping. Then, PC and his squad will get the go ahead to wipe the rest of the renegade monkey troops out.
not a glitch, just part of the fight, i think. once you kill a boss, maybe he stops calling in surplus troops. that happens in summer palace, as well as other players. that was nothing different or unusual