I just did the Medusa quest line in Aquila and there is a LOT of mismatched text and dialogue going on. The text is right on for the quest, but the dialogue that we hear is for completely wrong quests. Catbeard talks about MB winning against the Armada's Toy Soldiers when he should be saying he senses Medusa up ahead. Toro talks about the poor peasants in Mooshu when he should be talking about the situation at hand (first Medea being up ahead, then later about Medusa).
If you say you've already fixed this in the update coming up, I'll be happy and leave it at that.